Explore Bioinformatics

Bioinformatics

7 Programs

Genomic analysis

Keywords : bioinformatics pipeline NGS FASTQ VCF

Functionality : Analysis of human genomic data – the genomic variant calling pipeline.
BBMap

Keywords : Bowtie bowtie2 BWA

Functionality : BBMap is a bioinformatics toolkit that includes several alignment procedures. We specifically targeted the \textbf{BBMap.align
dnapars: an open-source bioinformatics program

Keywords : composition of metamorphic relations

Functionality : Infer evolutionary relationships among taxa using aligned sequences of characters, typically DNA or amino acids.
Deterministic network simulation component of GNLab

Keywords :

Functionality : A command-line tool for large-scale analysis and simulation of gene regulatory networks (GRNs)
SeqMap

Keywords :

Functionality : Perform short sequence mapping by solving an approximate string matching problem
dnapars and dnapenny

Keywords :

Functionality : Implement the maximum parsimony method to construct Phylogenetic trees
dnaml

Keywords :

Functionality : generate trees with the highest “likelihood” against an evolutionary model